species:   Asfum
pid:       PID2211
parent:    miR Cat_2
paralog:   
locus:     NC_007196.1:1982428-1982540
matures:   ['UGGCGUUGGAGCUGAGACUG', 'GUCCUUCCACGCCUUC']
srr:       SRR1583970
genome:    /Users/jax/+Genomes/Fungal_genomes/Asfum.GCF_000002655.1_ASM265v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Ozkan2017-qu.SRR1583970.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Ozkan2017-qu.SRR1583970.cram NC_007196.1:1982428-1982540

2 out of bounds
11 alignments
5 proper strand
5 stranded perfect matches

  ******************                                                                    **********************   
CGCGGUCCUUCCACGCCUUCCAGACCAGCGAGCGGGCCCGCGAGGUCGAGACGGGAAACCGCUUGGUGGAGAGGCCCAGGAAGCGGGUGAUGGCGUUGGAGCUGAGACUGUCG
.((((((((((((((((.((....(((.(((((((.(((((........).))))...))))))).)))....((((.......)))))).)))).)))))..).))))))..
------------------------------------------------------------------------------------------UGGCGUUGGAGCUGAGACUG--- l=20 a=1 c
----GUCCUUCCACGCCUUC--------------------------------------------------------------------------------------------- l=16 a=0 c*
------------------------------------------------------------------------------------------UGGCGUUGGAGCUGAGACUG--- l=20 a=1 ma
----GUCCUUCCACGCCUUC--------------------------------------------------------------------------------------------- l=16 a=0 ma*

--------------------------------CGGGCCCGCGA---------------------------------------------------------------------- l=11 a=1 
---------------------------------------------------------------------------------------UGAUGGCGUUGGAGCUGAGAC----- l=21 a=1 
-----------------------------------------------------------------------------------------AUGGCGUUGGAGCUGAGAC----- l=19 a=1 
-----------------------------------------------------------------------------------------AUGGCGUUGGAGCUGAGACUG--- l=21 a=1 
------------------------------------------------------------------------------------------UGGCGUUGGAGCUGAGACUG--- l=20 a=1 (c,ma)

mb-01011
ax-1011011
ku-01
ss-100110011000
fn-001
